Filter datasets

Product

, (1)

10x Visium; Expression profiling by high throughput sequencing, GPL24247 (1)

10x Visium; Expression profiling by high throughput sequencing; Other, GPL24247 (1)

10x Visium; Other, GPL24247 (2)

10x Visium; Other, GPL30202 (1)

ArrayExpress/BioStudies (2)

CRISPR screen; Expression profiling by high throughput sequencing, GPL24676 (1)

CRISPR screen; Expression profiling by high throughput sequencing; Other, GPL20795 (1)

CRISPR screen; Expression profiling by high throughput sequencing; Other, GPL21626 (1)

CRISPR screen; Other, GPL18573 (1)

CRISPR screen; Other, GPL18694 (1)

CRISPR screen; Other, GPL20301 (1)

CRISPR screen; Other, GPL24676 (2)

CosMx SMI; Other, GPL33484 (1)

CosMx SMI; Other, GPL36279 (1)

Expression profiling by array, 10787 (1)

Expression profiling by array, 11202 (1)

Expression profiling by array, 1261 (1)

Expression profiling by array, 13912 (1)

Expression profiling by array, 16570 (1)

Expression profiling by array, 21282 (1)

Expression profiling by array, 23038 (1)

Expression profiling by array, 6246 (2)

Expression profiling by array, 6887 (1)

Expression profiling by array, 7202 (1)

Expression profiling by array, 8321 (1)

Expression profiling by array, GPL10558 (1)

Expression profiling by array, GPL1261;570;8321 (1)

Expression profiling by array, GPL13667 (1)

Expression profiling by array, GPL16686 (1)

Expression profiling by array, GPL16699 (1)

Expression profiling by array, GPL19589 (1)

Expression profiling by array, GPL19965 (1)

Expression profiling by array, GPL570 (2)

Expression profiling by array, GPL6884 (1)

Expression profiling by high throughput sequencing, 13112 (1)

Expression profiling by high throughput sequencing, 17021 (5)

Expression profiling by high throughput sequencing, 19057 (1)

Expression profiling by high throughput sequencing, 21626 (3)

Expression profiling by high throughput sequencing, 24247 (11)

Expression profiling by high throughput sequencing, 28457 (1)

Expression profiling by high throughput sequencing, 34475 (1)

Expression profiling by high throughput sequencing, GPL11154 (1)

Expression profiling by high throughput sequencing, GPL17021 (2)

Expression profiling by high throughput sequencing, GPL17303 (1)

Expression profiling by high throughput sequencing, GPL18573 (3)

Expression profiling by high throughput sequencing, GPL19057 (1)

Expression profiling by high throughput sequencing, GPL20301 (3)

Expression profiling by high throughput sequencing, GPL20795 (1)

Expression profiling by high throughput sequencing, GPL23227 (3)

Expression profiling by high throughput sequencing, GPL24247 (4)

Expression profiling by high throughput sequencing, GPL24676 (11)

Expression profiling by high throughput sequencing, GPL24676;24247 (1)

Expression profiling by high throughput sequencing, GPL25526;GPL19969 (1)

Expression profiling by high throughput sequencing, GPL30172;18460 (1)

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing, GPL20301 (1)

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing, GPL24676;24247;21273 (1)

Expression profiling by high throughput sequencing; Other, 21103 (1)

Expression profiling by high throughput sequencing; Other, GPL19057 (1)

Expression profiling by high throughput sequencing; Other, GPL24247 (1)

Expression profiling by high throughput sequencing; Other, GPL24676 (1)

Flex (3)

Genome binding/occupancy profiling by high throughput sequencing, 21273 (1)

Genome binding/occupancy profiling by high throughput sequencing, GPL20301 (1)

GeoMx DSP; Expression profiling by array, GPL27956 (1)

GeoMx DSP; Expression profiling by high throughput sequencing, GPL30172 (2)

GeoMx DSP; Other, GPL24676 (1)

GeoMx DSP; Other, GPL30172 (4)

GeoMx DSP; Other, GPL32902 (1)

Histopathology, Whole Slide Image (1)

MERFISH; Other, GPL31217 (2)

MSD / MONAI (1)

Methylation profiling by genome tiling array, 16743 (1)

Methylation profiling by genome tiling array, GPL13534 (1)

Molecular Cartography; Other, GPL34640 (1)

Non-coding RNA profiling by high throughput sequencing, GPL11154 (1)

Orbitrap Fusion Lumos (1)

Other, GPL21103 (1)

Other, GPL21697 (1)

Other, GPL24247 (1)

Other, GPL24676 (3)

Other, GPL25758 (1)

Other, GPL32502 (1)

Other, GPL34284;GPL34698 (1)

Q Exactive (1)

Q Exactive HF (5)

Spatial Gene Expression (4)

Spatial transcriptomics (10x Visium), GPL24676 (1)

TCIA collection Colorectal-Liver-Metastases (1)

TCIA collection HCC-TACE-Seg (1)

TCIA collection TCGA-LIHC (1)

Universal 3' (5)

Universal 5' (3)

Whole-slide histopathology imaging (H&E prostate biopsies); AI grading challenge (Gleason/ISUP) (1)

Xenium; Other, GPL33762 (1)

Xenium; Other, GPL33896 (1)

base/prime editor; Expression profiling by high throughput sequencing, GPL24676 (1)

metabolite profiling; mass spectrometry; Gas Chromatography MS - positive (1)

metabolite profiling; mass spectrometry; Liquid Chromatography MS - positive - hilic; Liquid Chromatography MS - negative - hilic (1)

metabolite profiling; mass spectrometry; Liquid Chromatography MS - positive - reverse phase; Liquid Chromatography MS - negative - reverse phase (1)

multiplexed imaging (1)

scRNA-seq (10x Chromium Next GEM Single Cell 3' v3.1, dual index; cell hashing / TotalSeq-B multiplexing) (1)

scRNA/snRNA (2)

spatial (1)

timsTOF Pro (1)

Cell Ranger (11)

Cell Ranger; scanpy; Seurat; Palantir; MAGIC; harmonypy; scrublet; Decoupler; PyDESeq2; CellTypist; Cell Hashing (HTODemux) (1)

Python 3.8; ASAP 1.9; Singularity 3.8.3; PyTorch; TensorFlow (1)

Space Ranger (4)

Space Ranger; Seurat 5.2.1; BayesSpace 1.10.1; SpatialInferCNV 1.0.1; CytoTRACE 0.3.3; cell2location 0.1.4; SMURF 1.0.2; MEDICC2 1.8.2; Battenberg; ASCAT.sc; CNVkit 0.9.12; BWA-MEM 0.7.18; STAR 2.6.1; RSEM 1.3.3 (1)

Sample

Homo sapiens (3)

Human (15)

Mus musculus (30)

Mus musculus (mouse) (1)

Rattus (1)

human (72)

human; Mus musculus (2)

mouse (42)

unspec (22)

Blood (4)

Brain (1)

Cervix (1)

Colon (3)

Intestine (1)

Kidney (1)

Large Intestine (2)

Liver (202)

Lung (1)

Lymph Node (3)

Ovary (2)

Prostate (1)

Rectum (2)

Subcutaneous xenograft (1)

B-Cell Tumor (MALT) (1)

Cancer (5)

Colorectal Cancer (1)

Colorectal cancer (2)

Colorectal cancer liver metastasis (1)

Colorectal cancer lung metastasis (1)

Endometrial Adenocarcinoma (1)

Glioblastoma Multiforme (1)

Hodgkin's Lymphoma (3)

Invasive Adenocarcinoma (2)

MASLD/NAFLD/NASH (200)

Non-Cancer (1)

Prostate cancer (acinar adenocarcinoma) (1)

kidney cancer (1)

Oncology

Tumor and cancer-related samples.

Datasets(Total 219 datasets)

Product

Species

Anatomical entity

Disease state

Software

10k Cells from a MALT Tumor - Gene Expression with a Panel of TotalSeq™-B Antibodies

Human Immunology Oncology

10k Human Diseased PBMCs (ALL) Fixed

Human Immunology Oncology

10k Human Diseased PBMCs (ALL) Fixed and Stored for One Month

Human Immunology Oncology

10k Human Diseased PBMCs (ALL) Freshly Processed

Human Immunology Oncology

A CRISPR/Cas9 library screening identified CARM1 as a critical inhibitor for Sorafenib-induced ferroptosis in hepatocellular carcinoma cells

Human Oncology Single Cell MASLD

CRISPR screen; Expression profiling by high throughput sequencing, GPL24676

human

Liver

MASLD/NAFLD/NASH

A CRISPR/Cas9 library screening identified CARM1 as a critical inhibitor for Sorafenib-induced ferroptosis in hepatocellular carcinoma cells [CRISPR screen]

Human Oncology Single Cell MASLD

CRISPR screen; Other, GPL20301

human

Liver

MASLD/NAFLD/NASH

A Metabolic Switch Controlling Liver Cancer Evolution from Senescent NASH Hepatocytes

Mouse Oncology Single Cell MASLD

Expression profiling by high throughput sequencing, 24247

mouse

Liver

MASLD/NAFLD/NASH

A Metabolic Switch Controlling Liver Cancer Evolution from Senescent NASH Hepatocytes

Mouse Oncology Single Cell MASLD

Expression profiling by high throughput sequencing, 24247

mouse

Liver

MASLD/NAFLD/NASH

A Mouse Model for Metabolic Dysfunction-associated Steatotic Liver Disease and Hepatocellular Carcinoma

Human Mouse Oncology MASLD

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing, GPL24676;24247;21273

human

Liver

MASLD/NAFLD/NASH

A Mouse Model for Metabolic Dysfunction-associated Steatotic Liver Disease and Hepatocellular Carcinoma [ATAC-seq]

Mouse Oncology Single Cell MASLD

Genome binding/occupancy profiling by high throughput sequencing, 21273

mouse

Liver

MASLD/NAFLD/NASH

A Mouse Model for Metabolic Dysfunction-associated Steatotic Liver Disease and Hepatocellular Carcinoma [RNA-seq]

Human Mouse Oncology MASLD

Expression profiling by high throughput sequencing, GPL24676;24247

human

Liver

MASLD/NAFLD/NASH

A NEW PRECLINICAL MODEL OF WESTERN DIET-INDUCED PROGRESSION OF NON-ALCOHOLIC STEATOHEPATITIS TO HEPATOCELLULAR CARCINOMA

Mouse Oncology Single Cell MASLD

Expression profiling by high throughput sequencing, 21626

mouse

Liver

MASLD/NAFLD/NASH

A Panel of Glycopeptides as Candidate Biomarkers for Early Diagnosis of NASH Hepatocellular Carcinoma Using a Stepped HCD Method and PRM Evaluation

Oncology Single Cell MASLD

A preclinical mouse model of nonalcoholic steatohepatitis and hepatocellular cancer that mimics human disease

Human Mouse Oncology MASLD

Expression profiling by array, 6887

mouse

Liver

MASLD/NAFLD/NASH

A selective HDAC8 inhibitor potentiates antitumor immunity and efficacy of immune checkpoint blockade in hepatocellular carcinoma

Human Immunology Oncology MASLD

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing, GPL20301

human

Liver

MASLD/NAFLD/NASH

A selective HDAC8 inhibitor potentiates antitumor immunity and efficacy of immune checkpoint blockade in hepatocellular carcinoma [ChIP-seq]

Human Immunology Oncology MASLD

Genome binding/occupancy profiling by high throughput sequencing, GPL20301

human

Liver

MASLD/NAFLD/NASH

A selective HDAC8 inhibitor potentiates antitumor immunity and efficacy of immune checkpoint blockade in hepatocellular carcinoma [RNA-seq]

Human Immunology Oncology MASLD

Expression profiling by high throughput sequencing, GPL20301

human

Liver

MASLD/NAFLD/NASH

ATG9A-PLA2G6 axis reprograms phospholipid metabolism to drive metabolic liver disease and hepatocellular carcinoma

Oncology Single Cell MASLD

metabolite profiling; mass spectrometry; Liquid Chromatography MS - positive - hilic; Liquid Chromatography MS - negative - hilic

unspec

Liver

MASLD/NAFLD/NASH

Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer

Oncology Single Cell MASLD

—

Liver

MASLD/NAFLD/NASH

Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [CosMx_Stat1KO]

Mouse Oncology Single Cell MASLD

CosMx SMI; Other, GPL36279

Mus musculus

Liver

MASLD/NAFLD/NASH

Showing 1–20 of 219